PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633959.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 311aa    MW: 34429.8 Da    PI: 9.6671
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.5e-3868128262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++++++cprC++tntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  XP_013633959.1  68 PQEKVNCPRCNATNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 128
                     6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3067126IPR003851Zinc finger, Dof-type
PfamPF027012.2E-3270126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.42572126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MINVKPMEQI ISNTSNNTSQ QQQQQQQQQQ TFIATTARPN PNASNGGSGA GNDNNTATTM  60
ESTRKARPQE KVNCPRCNAT NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS  120
SRKNKRSSTP LASPSNPKLP DLNPPFFFAT QIPNKSSKDL NLLSFPVMQD HHHGMSQFLH  180
MPKVENNNTS SSIYASSSHG ASSRGMNTLL PGQMMDSNSV LYSSLGIPTM ADYKHSNNNL  240
SFSIDHHQGI GHNTINNNHR AEDNNHADDM NGASRVLFPF SGTKEFSSTN QEKSHNTYWS  300
GMFSNTGGSS W
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794811e-175JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633958.10.0PREDICTED: dof zinc finger protein DOF3.7-like isoform X1
RefseqXP_013633959.10.0PREDICTED: dof zinc finger protein DOF3.7-like isoform X2
RefseqXP_013690723.10.0dof zinc finger protein DOF3.7-like isoform X1
RefseqXP_013690727.10.0dof zinc finger protein DOF3.7-like isoform X2
SwissprotQ433851e-161DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A0D3BWD70.0A0A0D3BWD7_BRAOL; Uncharacterized protein
STRINGBo4g100110.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-154Dof family protein