PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634261.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 727aa    MW: 81230.7 Da    PI: 6.236
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-1976131156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  XP_013634261.1  76 RKRYHRHTQQQIQEMENFFKECPHPDDNQRKELSRHLGLDHLQIKFWFQNKRTQNK 131
                     789999***********************************************998 PP
2START160.99.6e-512564742206
                     HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     la  a+ el+++a+ +ep+W+  +  ++++  e++++++ + +     +++ea+r+ ++v+m +++ v  l+d++  W++++a    +a+t++++
  XP_013634261.1 256 LAVGAMSELIALAQMNEPLWKGGVhgTILDLNEYTRNLQNGLGpkpvgFRTEASRENAIVFMHHMDIVHRLMDVN-VWSTMFAgmvgRAMTHDTL 349
                     67889*******************9*9***********6655599******************************.******************* PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                      +g      g+++lm+ae+q+lsplv+ R+ +fvRy++q+g+g w +vd+S+d+  ++ e ++   ++++pSg+li++++n+ s+vtwvehv+++
  XP_013634261.1 350 LTGgqgnldGTIHLMTAEFQVLSPLVSsRECYFVRYCKQHGEGLWGVVDISIDHLIPNLE-PK---CRRRPSGCLIQDMPNRLSRVTWVEHVEVD 440
                     *********************************************************985.55...556************************** PP

                     SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +r   h++++ l++sg+a ga++wv+tl+rqce+
  XP_013634261.1 441 DRGElHAMFKNLLNSGQALGANRWVSTLDRQCER 474
                     **999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-2058131IPR009057Homeodomain-like
SuperFamilySSF466899.61E-1866134IPR009057Homeodomain-like
PROSITE profilePS5007116.21273133IPR001356Homeobox domain
SMARTSM003891.3E-1674137IPR001356Homeobox domain
CDDcd000867.22E-1775134No hitNo description
PfamPF000461.2E-1676131IPR001356Homeobox domain
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PROSITE profilePS5084834.111246477IPR002913START domain
SuperFamilySSF559611.54E-26248475No hitNo description
CDDcd088752.55E-97250473No hitNo description
SMARTSM002342.8E-40255474IPR002913START domain
PfamPF018522.7E-41257474IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-4357468IPR023393START-like domain
SuperFamilySSF559611.43E-14518719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MTISQLLRRS PRIANMSLPN YMEPVDDVNN NNNGDTDNNE NENNNNVNGG ASFGDEEFDS  60
ENQEDGNTQN PRAGKRKRYH RHTQQQIQEM ENFFKECPHP DDNQRKELSR HLGLDHLQIK  120
FWFQNKRTQN KNHQERHENL QLREENTRLR ADNHHFREAL ANASCPNCGG RTAVGEMSFE  180
EHHLHLENAK LTEEIRQLSE VAKYTGKAVM RYPVLPTPNQ APPFEPPMTT NGSIGNLSLS  240
NIGSVKEADR PLVIELAVGA MSELIALAQM NEPLWKGGVH GTILDLNEYT RNLQNGLGPK  300
PVGFRTEASR ENAIVFMHHM DIVHRLMDVN VWSTMFAGMV GRAMTHDTLL TGGQGNLDGT  360
IHLMTAEFQV LSPLVSSREC YFVRYCKQHG EGLWGVVDIS IDHLIPNLEP KCRRRPSGCL  420
IQDMPNRLSR VTWVEHVEVD DRGELHAMFK NLLNSGQALG ANRWVSTLDR QCERLAIMMA  480
SNIPSIEPGG QITVTNNAKQ SLLKLVERMS RGFFDGVTTS TADIWWNLAD YTGDSVSVMT  540
RKSLNDPGRP EGLILCAAHS FWVPVPPITV FDYLRDEKNR TNWDVLFLGG NPQKLTHIFN  600
GRDDRNCVSL LRSPNTSQSE MMMIEESSTE PAASFLVYAP VDVPSMEKVL NGGDPKCVPL  660
LPSGFAILPD GTAQPGKAGG SLVNVSFQML VDSSPSGMLT FSSVSTIESL ILAAANKIKA  720
YFPQQTA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634261.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3BSS60.0A0A0D3BSS6_BRAOL; Uncharacterized protein
STRINGBo4g045920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2