PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634340.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 310aa    MW: 35392.2 Da    PI: 8.5999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11159209154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h  +Er+RR+++N  ++ Lr+++P++   +  + + a+i+  A++++k L
  XP_013634340.1 159 QRMTHITVERNRRRQMNVHLNSLRSIIPSS---YFLRGDQASIVGGAIDFVKIL 209
                     79***************************9...99999**********999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.99E-9157214No hitNo description
PROSITE profilePS5088813.402158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14158221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-11159222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-6164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MERIQGQNKL CVNLLDQKVN VRRSLQVQAS AEDHSFPLEE DQSSNLTLQG TRLPFQQILQ  60
DPSSVLSFKD PHILGNYLPH EVPELHSPIH SETNHYYQNS LLEGTNEDIS SQELQLNPVD  120
NAFSRGKLRN NNLAASVSRE KRKRRRSKPM KNREEIESQR MTHITVERNR RRQMNVHLNS  180
LRSIIPSSYF LRGDQASIVG GAIDFVKILE QHLQSLEAQK ITQQTSKLII DATVMERHVN  240
LKMQCCQRRQ GQLVRSIFLL EKLGLTVLHL NVTSPCNASI AYSFNLKMED ACNLGSADEI  300
TAAVRQIFDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145KRKRRR
2141145RKRRR
3141146RKRRRS
4141148RKRRRSKP
5159170RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634340.10.0PREDICTED: transcription factor bHLH70-like isoform X3
SwissprotO810371e-135BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A078GQE30.0A0A078GQE3_BRANA; BnaC04g51620D protein
TrEMBLA0A0D3C6M40.0A0A0D3C6M4_BRAOL; Uncharacterized protein
STRINGBo4g197360.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-137bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]