PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634341.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 308aa    MW: 35179 Da    PI: 8.5999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11157207154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h  +Er+RR+++N  ++ Lr+++P++   +  + + a+i+  A++++k L
  XP_013634341.1 157 QRMTHITVERNRRRQMNVHLNSLRSIIPSS---YFLRGDQASIVGGAIDFVKIL 207
                     79***************************9...99999**********999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.37E-9155212No hitNo description
PROSITE profilePS5088813.402156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14156219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-11157220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-6162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MERIQGQNKL CLLDQKVNVR RSLQVQASAE DHSFPLEEDQ SSNLTLQGTR LPFQQILQDP  60
SSVLSFKDPH ILGNYLPHEV PELHSPIHSE TNHYYQNSLL EGTNEDISSQ ELQLNPVDNA  120
FSRGKLRNNN LAASVSREKR KRRRSKPMKN REEIESQRMT HITVERNRRR QMNVHLNSLR  180
SIIPSSYFLR GDQASIVGGA IDFVKILEQH LQSLEAQKIT QQTSKLIIDA TVMERHVNLK  240
MQCCQRRQGQ LVRSIFLLEK LGLTVLHLNV TSPCNASIAY SFNLKMEDAC NLGSADEITA  300
AVRQIFDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143KRKRRR
2139143RKRRR
3139144RKRRRS
4139146RKRRRSKP
5157168RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634341.10.0PREDICTED: transcription factor bHLH70-like isoform X4
SwissprotO810371e-137BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A3P6D1P50.0A0A3P6D1P5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g197360.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-138bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]