PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013634446.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 326aa MW: 34303 Da PI: 7.9562

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013634446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.1	1.2e-06	151	177	5	30
HHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 5 hnerErrRRdriNsafeeLrellPk.a 30 h+++Er RR+ri +++ L+el+P+ + XP_013634446.1 151 HSIAERLRRERIAERMKALQELVPNgN 177 99**********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.89E-5	144	185	No hit	No description
SuperFamily	SSF47459	2.09E-7	144	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.194	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-7	148	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MMDSLLTPST FSHMQTPATT FDHEDFLNHI FASAPWPSVD ETHAPQPPPS DGFLDSRNQQ 60 IMMMPLSSHH QNDNVDGSSA HALYNGFSAT GSRPFHIPQG SGGGPMHQQG QRQRQPQQQA 120 SASTDTGGTA VSPSQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKVL 180 SMSRLGGAAY VSSQISESGG SHGSASSAVA GGNQPTGNSN DGLTMTEHQV AKLMEEDMGS 240 AMQYLQGKGL CLMPISLATA ISTATSHTRN SLIPGAGDVG GRPSSSNLSG KTVQTMNTLK 300 LNSNGNGMAE GSSSIAVKEA VSISKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013634446.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493711	2e-35	AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
GenBank	AF488601	2e-35	AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634446.1	0.0	PREDICTED: transcription factor bHLH66 isoform X2
Swissprot	Q9ZUG9	1e-147	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D3C1P9	0.0	A0A0D3C1P9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6CC68	0.0	A0A3P6CC68_BRAOL; Uncharacterized protein
STRING	Bo4g154370.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-122	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]