PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634524.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 192aa    MW: 22088.1 Da    PI: 10.7606
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.12.6e-25100153356
         G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     r++W++eLH r  +a++++GGs++AtPk+i+++mkv+gLt+++vkS LQkYR++
  XP_013634524.1 100 RRKWSEELHWRITDALQKIGGSQVATPKQIRDIMKVDGLTNDEVKSQLQKYRMH 153
                     99**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2296156IPR009057Homeodomain-like
SuperFamilySSF466894.12E-1296156IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-20100153IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLLMNEAIER LKQEASSVQG VELKTDNKKN WMSSSQLWIS NSNSQSQSKR KRKQRGAIMS  60
FNRPPPPPPS APLSLPTSEI LTDYSSRIEQ SHPIQKKELR RKWSEELHWR ITDALQKIGG  120
SQVATPKQIR DIMKVDGLTN DEVKSQLQKY RMHIRKHPLH PTKNFSASDQ PRETQNLISL  180
SRSDSPQGPL DW
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634524.11e-138PREDICTED: protein PHR1-LIKE 1-like
SwissprotF4JRB02e-65HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A0D3BTD21e-136A0A0D3BTD2_BRAOL; Uncharacterized protein
STRINGBo4g053920.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-55G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]