PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634623.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 283aa    MW: 32166.7 Da    PI: 7.33
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC  C ksF + s L  H+r+H
  XP_013634623.1  4 YKCRFCLKSFINGSALGGHMRSH 26
                    9*********************9 PP
2zf-C2H214.97.6e-05170192123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cgk F++   L  H  +H
  XP_013634623.1 170 FKCETCGKAFKSYQALGGHRASH 192
                     89***********9999998887 PP
3zf-C2H212.60.00041218240123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_013634623.1 218 HQCPICLRVFTSGQALGGHKRSH 240
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-5327IPR007087Zinc finger, C2H2
SuperFamilySSF576679.37E-10326No hitNo description
SMARTSM003550.026426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429426IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.37E-10165192No hitNo description
PfamPF139122.6E-11169194IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.967170197IPR007087Zinc finger, C2H2
SMARTSM003550.026170192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4170198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141218240IPR007087Zinc finger, C2H2
SMARTSM003550.072218240IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-11218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERYKCRFCL KSFINGSALG GHMRSHMLTL SSKREERPSQ LSEETESDAS SSSSSDGDKE  60
MEFGFSESET ESSRINPTRK RSKRTRKLGS FGFDFKKVKT SQLGETEHHH SSASDTTTEE  120
DLAFCLIMLS RDKWKQQNKT KQTLVEEEEE EEDESDHECK NRGGGGRGRF KCETCGKAFK  180
SYQALGGHRA SHRKNKTFTK TEHEEKTEYS VNEEKKIHQC PICLRVFTSG QALGGHKRSH  240
GINNIVSGRV PKEEVSVKQR MIDLNLPAPN EDVETSVVVF DEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634623.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-106ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A0D3C6C40.0A0A0D3C6C4_BRAOL; Uncharacterized protein
STRINGBo4g195370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-85C2H2-like zinc finger protein