PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013634677.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 211aa MW: 23133.9 Da PI: 8.7539

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013634677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.5	3.4e-32	42	173	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......... 88 +++++++ h kv+gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a ++ + s++s+ + XP_013634677.1 42 QTKSSKDGHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLRHAEPSIISATGTGIKPAADSVSRSQVSN-G----Fwanetgfgiv 131 67899*********************************************************9999955522222222.1....01222334555 PP TCP 89 .........................................k 89 XP_013634677.1 132 ganptgggldlncgigflgfdfngssdmgfennqmpqvgmwG 173 555555555555555566666555555555555555555551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.2E-25	45	200	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.632	46	100	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDPKNPPNLL NPEAEVKVLN NTVEGKSKWK QKEKGKQGRE IQTKSSKDGH LKVEGRGRRV 60 RLPPLCAARI FQLTRELGHK SDGETLQWLL RHAEPSIISA TGTGIKPAAD SVSRSQVSNG 120 FWANETGFGI VGANPTGGGL DLNCGIGFLG FDFNGSSDMG FENNQMPQVG MWGVLNPQIY 180 QQMGQEQAKV LQHHHHHPHE AQQENADKQG S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013634677.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634677.1	1e-156	PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP6
Swissprot	Q9FLM6	2e-61	TCP6_ARATH; Transcription factor TCP6
TrEMBL	A0A078J987	1e-139	A0A078J987_BRANA; BnaC01g43000D protein
STRING	Bo4g140760.1	1e-122	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	3e-59	TCP family protein

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]