PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634882.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 725aa    MW: 81025.9 Da    PI: 6.6768
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.66e-2069124156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++tk+q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  XP_013634882.1  69 RKRYHRHTKHQIQEMENFFKECPHPDDTQRKELSRQLGLDHHQIKFWFQNKRTQIK 124
                     789999**********************************************9988 PP
2START1619.1e-512524712206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     lae a++el+++a ++ep+W   +      +n  e+++++  + +      ++ea++a+ + +m++ + v++l+d++  W++++a    +a+ ++
  XP_013634882.1 252 LAELAMEELMAMARLDEPLWNIGAngtsLALNLNEYTRIVRNGLGpilngLRIEASKATSIAFMNHLDIVQSLMDVN-LWSNMFArmvaRAMSHD 345
                     77889****************9999887778999999999665559999****************************.******999999***** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     +i +g      ga +lm+ae+q+lsp+v+ R+ +fvRy++q+g+g w++vdvS+d+  ++ e     +++++pSg+li++ +ng +kvtwvehv+
  XP_013634882.1 346 AILTGvqgnfdGAFHLMTAEYQVLSPVVStRECYFVRYSKQQGDGIWAVVDVSIDHLFPNLE----LKCRRRPSGCLIQQIENGFCKVTWVEHVE 436
                     **********************************************************9997....99999************************ PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h l++sl++sg+a  a +wv+tl+rqce+
  XP_013634882.1 437 VDDREVHPLYKSLISSGQALSAERWVETLERQCER 471
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-2247124IPR009057Homeodomain-like
SuperFamilySSF466891.09E-1955127IPR009057Homeodomain-like
PROSITE profilePS5007116.68266126IPR001356Homeobox domain
SMARTSM003894.9E-1867130IPR001356Homeobox domain
CDDcd000863.95E-1869127No hitNo description
PfamPF000461.5E-1769124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PROSITE profilePS5084837.909242474IPR002913START domain
SuperFamilySSF559612.29E-28244473No hitNo description
CDDcd088752.42E-100246470No hitNo description
SMARTSM002343.6E-40251471IPR002913START domain
PfamPF018521.2E-42252471IPR002913START domain
SuperFamilySSF559616.34E-13496687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MSQPNMVPVE MNNNIGDGDN NNNGNNTTTT NNDMNGGIVL GDEEIDSANT SENQEDGSDH  60
QDPARPSKRK RYHRHTKHQI QEMENFFKEC PHPDDTQRKE LSRQLGLDHH QIKFWFQNKR  120
TQIKNHQERH ENSQLRAEND RLRAENHQCR ASIAKAICHR CGGKTAIGEM SFEEHHLLLE  180
NTKLAEEIRQ LSLVMPKCTG KPVMNYTLTP PVPARPSEEI ASNRREVYGS IGNLPGSALR  240
VKDVDKPLII ELAELAMEEL MAMARLDEPL WNIGANGTSL ALNLNEYTRI VRNGLGPILN  300
GLRIEASKAT SIAFMNHLDI VQSLMDVNLW SNMFARMVAR AMSHDAILTG VQGNFDGAFH  360
LMTAEYQVLS PVVSTRECYF VRYSKQQGDG IWAVVDVSID HLFPNLELKC RRRPSGCLIQ  420
QIENGFCKVT WVEHVEVDDR EVHPLYKSLI SSGQALSAER WVETLERQCE RLAYIMTQNV  480
PSIEPDGQIM ITNNAKQSLL KIAERMTRSF LTGVATSNGD IWFRLSGNAG STVRAMTRKS  540
LNDPGRPVGV ILYASTSFWL PVPPKTVFDF LRDAKNRTNW DVITTGGEDL QLMSQIGNGR  600
DSRNCVSLLR TPNTSQKKMM MIQETSTDPT ASFVIYAPLD VTLTENVLMG GDPGNVSLLP  660
MGFAILPDGT AQPGREGGSL VSAAFQVLAE KDPSARLSFS SLATTENLIL KTAHKIRAYF  720
SQQTV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634882.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3C3M00.0A0A0D3C3M0_BRAOL; Uncharacterized protein
STRINGBo4g177910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2