PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635223.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 184aa    MW: 19882.2 Da    PI: 4.3396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-181666255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++k++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  XP_013635223.1 16 LYKGVRQRKNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 66
                    69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.91E-281576No hitNo description
PfamPF008471.1E-111566IPR001471AP2/ERF domain
PROSITE profilePS5103220.8241674IPR001471AP2/ERF domain
SMARTSM003801.8E-301680IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-271676IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-191676IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNIPGTSKEN SGRHPLYKGV RQRKNSDKWV SEIREPRKPN RIWLGTFSTP EMAAIAYDVA  60
ALALKGTQTG LNFPNSASSL PVPASMSPGD IQAAAASAAA AFGAARDAIV VANNSSVERS  120
NVMMNGSYEN TNGFMDEDLI FDMPNVLMNM AEGMLLSPPC QFTFDAASEA DDYAGEDDYL  180
WNFT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635223.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635223.11e-134PREDICTED: ethylene-responsive transcription factor ERF024-like
RefseqXP_013688931.11e-134ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR07e-86ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D3BRI71e-130A0A0D3BRI7_BRAOL; Uncharacterized protein
STRINGBo4g034600.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-74ERF family protein