PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635274.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 197aa    MW: 22624.4 Da    PI: 6.953
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30105163159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K+++gs+fpr+Y++C+ ++C vkkk+er++++p++v +tYeg+Hnh+
  XP_013635274.1 105 LDDGFKWRKYGKKPIRGSPFPRHYHKCSNPNCIVKKKIERDTSNPDYVLTTYEGRHNHP 163
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2799165IPR003657WRKY domain
PROSITE profilePS5081128.552100165IPR003657WRKY domain
SuperFamilySSF1182902.48E-25101165IPR003657WRKY domain
SMARTSM007742.2E-31105164IPR003657WRKY domain
PfamPF031061.1E-21106163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNYPSNPSPN FIDFPKTFTS DDYDDAFQMI MEQISLEDHS PTLSWTSSEK LLAAEVTSPL  60
QTSLVTSPMS LEIGDKTDEI KKRKRHKDGP IIHVFKTKSI EEIALDDGFK WRKYGKKPIR  120
GSPFPRHYHK CSNPNCIVKK KIERDTSNPD YVLTTYEGRH NHPSPSVVYC DSDDFDLTSL  180
NILSFQTRTY NYSHSAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-231051661778Probable WRKY transcription factor 4
2lex_A7e-231051661778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00270DAPTransfer from AT2G21900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300660.0KF430066.1 Brassica rapa WRKY transcription factor 59 (WRKY59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635274.11e-146PREDICTED: probable WRKY transcription factor 59
RefseqXP_013669910.11e-146probable WRKY transcription factor 59
SwissprotQ9SJ092e-92WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A078I5U81e-144A0A078I5U8_BRANA; BnaCnng13810D protein
TrEMBLA0A0D3C1291e-144A0A0D3C129_BRAOL; Uncharacterized protein
STRINGBo4g148210.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.11e-94WRKY DNA-binding protein 59