PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635505.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 201aa    MW: 23556.5 Da    PI: 4.4775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.42.9e-1981441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     lp+GfrF+Ptd e+ ++ L+k+v +++ +++ +   v +e+ di++ +P+dLp   + +e++wyf++k+ +++ t   +n   ++++Wk+ g ++
  XP_013635505.1   8 LPVGFRFRPTDCEISKYLLTKNVMEEQpMKVRNvryVPEEChDIFSKHPRDLPG--YPRETDWYFYCKKLSSQVT---TN---SHSIWKQIGDET 94 
                     79************9999998888777655544222456669***********4..34789*******9876543...33...3579******** PP

             NAM  91 evlsk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                     +vl+   +++lvg+k+ +++             ++ ++++ +W+m+e +l
  XP_013635505.1  95 DVLDPknNDALVGIKRPFTLVdheeesddilLSDEDEPSQYNWFMDEISL 144
                     ***98666677*****99999666655554437788888*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-235161IPR003441NAC domain
PROSITE profilePS5100527.418161IPR003441NAC domain
PfamPF023659.1E-129143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MELKLRGLPV GFRFRPTDCE ISKYLLTKNV MEEQPMKVRN VRYVPEECHD IFSKHPRDLP  60
GYPRETDWYF YCKKLSSQVT TNSHSIWKQI GDETDVLDPK NNDALVGIKR PFTLVDHEEE  120
SDDILLSDED EPSQYNWFMD EISLPLKVSE TDWVLCHVFR KIKPEFESKE EEEEEESVVA  180
KSLDLLREND GNVLPPSHSP P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325431e-115AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635505.11e-147PREDICTED: NAC domain-containing protein 62
TrEMBLA0A0D3C0D71e-145A0A0D3C0D7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9B51e-145A0A3P6C9B5_BRAOL; Uncharacterized protein
STRINGBo4g140840.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.14e-67NAC family protein