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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_013635537.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 167aa MW: 19234.8 Da PI: 5.2957 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.8 | 0.00035 | 71 | 94 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23
C++C+ ++++ +++ +H+++ H
XP_013635537.1 71 ICEICDVVYKTCDDFITHLKSeqH 94
7******************98666 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00355 | 5.8 | 70 | 94 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF12874 | 0.021 | 72 | 94 | No hit | No description |
| SMART | SM00355 | 9.7 | 111 | 135 | IPR015880 | Zinc finger, C2H2-like |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 167 aa Download sequence Send to blast |
MLISGDSTMV NRCRLQKFSK FSKFCAYPED VGPVTTLDNQ GEKVFVKEFV WESLLTANAS 60 PCAAMDEPLC ICEICDVVYK TCDDFITHLK SEQHRESLFG IVPLDYGKPR YFCPVCNYPA 120 YDEFNMSLHN ESKDHNHKLA DKEQDCESRK RNPQVDLFNE ISKKQSL |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_013635537.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_013635537.1 | 1e-124 | PREDICTED: uncharacterized protein LOC106341281 | ||||
| TrEMBL | A0A0D3C6Q2 | 4e-55 | A0A0D3C6Q2_BRAOL; Uncharacterized protein | ||||
| STRING | Bo4g198630.1 | 6e-56 | (Brassica oleracea) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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