PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635548.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 251aa    MW: 28671.4 Da    PI: 8.1626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05110131223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  Cgk F ++++L  H+r+H
  XP_013635548.1 110 RCCLCGKEFQTRHSLFGHMRRH 131
                     7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.14264IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.17E-64264No hitNo description
PROSITE profilePS501579.8894269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139120.00334466IPR007087Zinc finger, C2H2
SuperFamilySSF576677.17E-6104131No hitNo description
SMARTSM003550.031109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159109131IPR007087Zinc finger, C2H2
PfamPF138940.0013110131No hitNo description
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKRTRDDDNP SHFLHEYDED DEEDSSSGGF QPPSPPPQQV KHFCVICSKQ FSSGKAYGGH  60
VRIHSSEYSN KGKTKKMRMK KKRKIGLVNK EKEKEKEIDL IRADFEGKIR CCLCGKEFQT  120
RHSLFGHMRR HPERSWKGVR PPPPEKLNLS FLDDDADEND GDDVMSRSIM MSGVTRDVHD  180
AACCLMMLKS GKRKANSEVR SFSYCNDEMD VKGSTVDMKI KVEIEVNANN PQTDPKKKSL  240
GFDLNQPCHE S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635548.10.0PREDICTED: uncharacterized protein LOC106341294
TrEMBLA0A0D3BUK10.0A0A0D3BUK1_BRAOL; Uncharacterized protein
STRINGBo4g076920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-70C2H2 family protein