PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013635637.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 139aa MW: 15919.7 Da PI: 8.4669

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013635637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + Fs+ L H++ H XP_013635637.1 20 YICEFCERGFSNAQALGGHMNIH 42 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.43E-7	17	46	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.2E-6	17	46	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.24	20	47	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MNRKYSDRRS YSWSGQARPY ICEFCERGFS NAQALGGHMN IHRKDRAKLR QANLKEDDRE 60 DSTCTTSRNR FEQDLTELPF FVDSTVGSST KQDKNTSGDY LGGEEKKMMK LQNALSHSAE 120 VIDLELRLGL DPYKKSPST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013635637.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635637.1	1e-101	PREDICTED: transcriptional regulator TAC1
TrEMBL	A0A078JQT1	1e-100	A0A078JQT1_BRANA; BnaC04g55680D protein
TrEMBL	A0A0D3BY95	1e-100	A0A0D3BY95_BRAOL; Uncharacterized protein
STRING	Bo4g120550.1	1e-101	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6991	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	7e-75	C2H2 family protein