PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635666.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 246aa    MW: 27907.6 Da    PI: 4.8828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.66.1e-10117207282
                     EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
              B3   2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                     +k+lt sdv +  +rl+l k+ +++                +e+ +++++ ++g  +++++k+  ++ + + vlt+GWk+Fv+  +L+  +Df++
  XP_013635666.1 117 KKQLTMSDVENGqCRLMLGKQQVQKKmhpllehseipL-G-TEGLDVSVYGSNGevQTMKFKM--WGED-TPVLTSGWKDFVDKYDLEkHRDFLT 206
                     5899999999887**********999999887766642.2.2667999999999666666666..9997.679**************97889998 PP

                     E CS
              B3  82 F 82 
                     +
  XP_013635666.1 207 I 207
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.28E-13116211No hitNo description
SMARTSM010190.0014116222IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-13117213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-13117221IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVTSKEETTS VVITQEDREA AETLIKLSQD TRYQPVEEED AAPSSTLLLQ QCKAKEKQHS  60
KKDDKISMES TKGKTEVDDT EETLMILQEW SHTKPDPVEK IFSGDADVAE LFSEPIKKQL  120
TMSDVENGQC RLMLGKQQVQ KKMHPLLEHS EIPLGTEGLD VSVYGSNGEV QTMKFKMWGE  180
DTPVLTSGWK DFVDKYDLEK HRDFLTIWMF RHRVTRGICF AIDSTSFSVT GPLSSRISKS  240
VFPNPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635666.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635666.10.0PREDICTED: putative B3 domain-containing protein At4g03160
SwissprotQ9ZR142e-51Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLA0A0D3C5B70.0A0A0D3C5B7_BRAOL; Uncharacterized protein
STRINGBo4g188830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.19e-54B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]