PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635717.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 168aa    MW: 18645.5 Da    PI: 8.2202
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.6e-39181181100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf aeq +++fa++hk+FGasn +k+l +lp ++r da+++l yeA ar+rdPvyG+vg++++lq+q+++l+ae+
  XP_013635717.1  18 PCGACKFLRRKCVRGCVFAPYFDAEQgTASFAAIHKVFGASNTSKMLLRLPLHKRLDAVATLGYEALARVRDPVYGCVGHLFSLQHQVMNLQAEI 112
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_013635717.1 113 AHVQAR 118
                     *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32917119IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-3718116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MMTTNLNGGG RGGGGEGPCG ACKFLRRKCV RGCVFAPYFD AEQGTASFAA IHKVFGASNT  60
SKMLLRLPLH KRLDAVATLG YEALARVRDP VYGCVGHLFS LQHQVMNLQA EIAHVQARLS  120
MFQRLPLVPP QQMQQPPFDL AYNNEYPMEP TNLDVVWEEE QLPQTVRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37141167110LOB family transfactor Ramosa2.1
5ly0_B1e-37141167110LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1814GGRGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635717.11e-124PREDICTED: LOB domain-containing protein 19-like
SwissprotO221323e-84LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A078J3M71e-122A0A078J3M7_BRANA; BnaC04g56950D protein
TrEMBLA0A3P6D1491e-122A0A3P6D149_BRAOL; Uncharacterized protein
STRINGBra040312.1-P5e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-77LOB domain-containing protein 19