PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635728.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 209aa    MW: 23383.8 Da    PI: 6.624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+ +Fs+   L  H  +H
  XP_013635728.1 157 YQCKTCDWTFSSFQALGGHRASH 179
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.46E-5155184No hitNo description
PfamPF139121.1E-9156181IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993157184IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEAFEELIAT SKEQSLILKG KRTKRQRPQS PVHFSISPPI VSCPARDVIE EYIYLDSKEN  60
ALGNNVENHK KDGVITSSSS SASWSSNNNP TTLKAEEDEE DLDIASCLIL LSQGHSLPQL  120
KIPNHETNNN NTYKFSSRRF LETSSSNGGG KADSYVYQCK TCDWTFSSFQ ALGGHRASHK  180
KHKATSFYSN LDQVFVYDDI YSSITNIYA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635728.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367840.0AC236784.1 Brassica napus clone JBnB009P12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635728.11e-156PREDICTED: zinc finger protein ZAT5-like, partial
TrEMBLA0A0D3E7961e-127A0A0D3E796_BRAOL; Uncharacterized protein
STRINGBo9g069630.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-88C2H2 family protein