PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635837.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 242aa    MW: 27404.5 Da    PI: 9.4487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1419113199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l  +d +++++  +p++f ++ + k + + ++tl+  +  sW+v+l  +   g   + +kGW++F ++n+L +++f++F+ +g+++   +v
  XP_013635837.1  19 FFKILADEDLSSESMRLIPNEFWRRSKCK-NLPPKVTLKVAWESSWTVNL--SPFMGCyLMERKGWEKFLNDNHLGDNEFLTFTDEGNNCI--TV 108
                     99*********************988544.56779***************..66665525666*********************4444444..88 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                      +f+k
  XP_013635837.1 109 DIFQK 113
                     88876 PP
2B3505.5e-161602371396
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +  l++p +fa+eh+ k  + ++ ++ d++g+ Wev +    + g+ ++++GW+  ++  gL +gD ++F+l++   +e+v+ v
  XP_013635837.1 160 LTVLSIPVTFAKEHMPK-VR-TKFVIHDPKGKPWEVVY--VPSNGSKLFSSGWRFLANGYGLAVGDLCTFRLVR--PREMVLEV 237
                     4569**********644.33.58***************..9999999************************987..44455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-1615115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-1517118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-1318111No hitNo description
PROSITE profilePS5086311.58919114IPR003340B3 DNA binding domain
SMARTSM010193.3E-1219114IPR003340B3 DNA binding domain
PfamPF023624.8E-1319113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-20142239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-20144239IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.858148241IPR003340B3 DNA binding domain
CDDcd100171.52E-13151238No hitNo description
SMARTSM010194.4E-14151241IPR003340B3 DNA binding domain
PfamPF023624.6E-13158234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MARNIAFGRI QEDMNKTSFF KILADEDLSS ESMRLIPNEF WRRSKCKNLP PKVTLKVAWE  60
SSWTVNLSPF MGCYLMERKG WEKFLNDNHL GDNEFLTFTD EGNNCITVDI FQKNCIEILK  120
PLNTSSSTES KKKVDSNVYG ASSSSSSAAT FSLTIKKSHL TVLSIPVTFA KEHMPKVRTK  180
FVIHDPKGKP WEVVYVPSNG SKLFSSGWRF LANGYGLAVG DLCTFRLVRP REMVLEVLHS  240
SS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635837.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635837.11e-180PREDICTED: B3 domain-containing protein At5g18090-like isoform X2
TrEMBLA0A078GDF11e-162A0A078GDF1_BRANA; BnaC04g49490D protein
TrEMBLA0A3N6R6161e-162A0A3N6R616_BRACR; Uncharacterized protein
TrEMBLA0A3P6CP331e-162A0A3P6CP33_BRAOL; Uncharacterized protein
STRINGBra037663.1-P1e-157(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.14e-48B3 family protein