PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013636013.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 184aa MW: 20873.8 Da PI: 10.4149

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013636013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	154.5	7.1e-48	35	174	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstW+p+++ r+ + +s++++++k+ + ++s+k s l +++s +++ XP_013636013.1 35 EEKVCRDCGNRAKKECLFERCRTCCKSRGYKCATHVKSTWIPSHHHRSP-----S------SSSDRNRNKKLKIDSSDKPSVLIVPTTTSRRQER 118 6789*************************************998873.....1......2223344455555555666666666666666665 PP DUF702 99 eletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +++ lP +++++avf+++rv+++++ ++ e++Yq++v+i Ghvf+G+L+++G+++ XP_013636013.1 119 SFKEG-LPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTIHGHVFRGFLHYHGVDH 174 55544.***************9857789*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-44	37	173	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.1E-26	38	78	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.3E-26	124	172	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MLGLRNIILL PPPSQITHPS VEDNNNNKAR NSNVEEKVCR DCGNRAKKEC LFERCRTCCK 60 SRGYKCATHV KSTWIPSHHH RSPSSSSDRN RNKKLKIDSS DKPSVLIVPT TTSRRQERSF 120 KEGLPGKIEA PAVFKRTRVT AISNEEQSEI GYQATVTIHG HVFRGFLHYH GVDHNKVFPC 180 LSKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013636013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636013.1	1e-135	PREDICTED: protein SHI RELATED SEQUENCE 6-like
Swissprot	Q9M2U4	3e-91	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A078FLR0	1e-133	A0A078FLR0_BRANA; BnaC04g26320D protein
STRING	Bo4g119970.1	1e-123	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-91	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]