PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636047.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 411aa    MW: 47173 Da    PI: 5.4339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-10181262279
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79 
                     fk+ t +d l+++ l++  ++ ++   +  ++++++l +++   r+W+ +l+++  +++  y l +GW++Fvk+n+L+++ +
  XP_013636047.1 181 FKQITENDFLNERELSIVEEHHRADRDEGLKGVDVILLNSNDaeRQWNANLRIWEMRSSfnYALCSGWNQFVKENDLEVNQT 262
                     699999***************99985555678999999988888*******8877666668*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037543.6E-32141253IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.1E-15152286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-13159279IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-10161260No hitNo description
PROSITE profilePS5086310.095181283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MVTHDDDDVN KRGESSSQEG EKRCFDLFAA LLHAYGDDET RARRRQDEQA RNMLMIHTIT  60
SAATNTFLRG KRKIDDECKN QENTASTSSS SHVVESKRRR VVESNDEPIR AQPIREIKPP  120
VKERKRPVKQ KEPVRREPGV TPGWLVELMR RKNGVDAKLV IEKVITKTDL KPDQGRLLIP  180
FKQITENDFL NERELSIVEE HHRADRDEGL KGVDVILLNS NDAERQWNAN LRIWEMRSSF  240
NYALCSGWNQ FVKENDLEVN QTRRLWSFHS RDGKLFLVFD PLTPAQPQSQ DEGMALALVP  300
FNPEASSSSM ALVVTCEEDP FVCEERNRRL LPKIPRSSRS PRVCVSPPTS DSSNLYLDEG  360
LDLNRTPPPE MDPDLEAVQE MHIRWTSQEA ITETSLVSFT ETTTVDLELR L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636047.10.0PREDICTED: B3 domain-containing protein At2g31720-like
TrEMBLA0A397ZNI00.0A0A397ZNI0_BRACM; Uncharacterized protein
STRINGBra021738.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM275656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.12e-13B3 family protein