PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636160.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 317aa    MW: 36348.2 Da    PI: 7.977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12152202154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h  +Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  XP_013636160.1 152 QRMTHITVERNRRRQMNVYLSSLRSLIPPS---YILRGDQASIVGGAIDFVKLL 202
                     79****************************...9****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15143215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-10150207No hitNo description
Gene3DG3DSA:4.10.280.101.2E-11150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.475151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-9157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEEKIQGQNK LSSLDQKVIV RRSLQVQGSS EDQRFVLEED TMQQSEDLYS VLSLKDPNFL  60
ALLSLQTLQK PPWELGDYLP HEVPEFHSPT NYYHQNPSLE RINEAISTQE LQLNPQRKRR  120
NSNNLVAASV SREKRKRKRT KPTKNTEEME SQRMTHITVE RNRRRQMNVY LSSLRSLIPP  180
SYILRGDQAS IVGGAIDFVK LLEQQLQSLE AQKSTQQTDS KDISLPAGDE EQSSKLRIDA  240
TVIESHVNLK IQCPKKQGQL LRSIIWLEKL RFTVLHLNVT SPCNASVSYS FNLKMEDDCT  300
LTSADEITAA VRQILDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117138KRRNSNNLVAASVSREKRKRKR
2134141RKRKRTKP
3152163RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636160.10.0PREDICTED: transcription factor bHLH70 isoform X2
SwissprotO810371e-140BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A0D3BNQ40.0A0A0D3BNQ4_BRAOL; Uncharacterized protein
STRINGBo4g006950.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-127bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]