PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636297.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 264aa    MW: 30834.3 Da    PI: 9.708
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.1e-1617971298
                    HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     ++ l +p  f+++h +g +  + + +l++  s  +W+vk+  + ++ r  lt+GWkeF+ a++L++gD+v+F+ +++++f  +v++f 
  XP_013636297.1 17 HTH-LKIPVAFFSKHmEGRNDHKNKAKLRSeASEMTWKVKI--EDGR-R--LTEGWKEFALAHDLRVGDIVIFRQEKDMSF--HVTLFG 97
                    455.99**********5555566799****55669******..4444.3..9**********************7777777..998886 PP
2B352.31e-16174264698
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++    k++rl+lp  f++++g++   +++l l d++  +W   l+ + +++r+ + +GWk+F kan Lk g+++ Fkl+++ ++++v+k+++
  XP_013636297.1 174 IRYWDVKNSRLYLPMAFTKDNGINV--KTKLALLDKNDVKWPTDLRSEYNGKRIRMIGGWKKFFKANFLKMGESIKFKLIWDGDTSCVLKLCS 264
                     555667899************9884..458***************9999999999999************************99999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-245111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-195106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.534599IPR003340B3 DNA binding domain
CDDcd100171.61E-15696No hitNo description
SMARTSM010192.0E-23899IPR003340B3 DNA binding domain
PfamPF023622.2E-111896IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-16163261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-18166258IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.62169264IPR003340B3 DNA binding domain
SMARTSM010193.6E-16169264IPR003340B3 DNA binding domain
PfamPF023622.1E-16169264IPR003340B3 DNA binding domain
CDDcd100172.88E-14182260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRMANKHFFQ PLLPGFHTHL KIPVAFFSKH MEGRNDHKNK AKLRSEASEM TWKVKIEDGR  60
RLTEGWKEFA LAHDLRVGDI VIFRQEKDMS FHVTLFGPSC CEIQYGSCID QDNNLEKIQE  120
KKNPKREEAE SSCFVANVRQ ESDEESNHIS SQERIDREDK KGSTSQSRFV TLTIRYWDVK  180
NSRLYLPMAF TKDNGINVKT KLALLDKNDV KWPTDLRSEY NGKRIRMIGG WKKFFKANFL  240
KMGESIKFKL IWDGDTSCVL KLCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636297.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM41e-72REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A0D3C1U31e-173A0A0D3C1U3_BRAOL; Uncharacterized protein
STRINGBo4g154810.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2146535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.16e-75B3 family protein