PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636305.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 260aa    MW: 29739.5 Da    PI: 5.2325
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind29.22.5e-091650438
                    HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHH CS
    HSF_DNA-bind  4 kklyeiledeelkeliswsengnsfvvldeeefak 38
                    +klye+++d+++++++swse+g+sf+v+de ef +
  XP_013636305.1 16 SKLYEMVDDHSTDSIVSWSESGKSFIVWDEVEFRR 50
                    69*******************************87 PP
2HSF_DNA-bind45.61.8e-14141222289
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                     F++ +y++++d+++++++sw e+g+sf+v++e+ef ++vLp+   F  + ++S++  L+  g++kv+++e+        we++ +++ +g
  XP_013636305.1 141 FIRGVYDMVDDPSTDSVVSWGESGKSFIVWNETEFLRDVLPSrlPFDYKDMTSLTTWLHAIGYSKVEESEH--------WEYTADYLVRG 222
                     9999************************************99667*********************99984........66666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5692IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.97E-101587IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-91650IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-71651IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.1E-11137224IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-17137224IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-15138224IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-13141224IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MYHDKKGETF VSDCRSKLYE MVDDHSTDSI VSWSESGKSF IVWDEVEFRR ALRLPGGCLG  60
YLGFSQSQSH EQCEYACPYF MRGQPDLKPS RDKIETDNKG LDSSNDGLIR FSSLSCYKEM  120
ARLARKERPP SSSIRRPLPL FIRGVYDMVD DPSTDSVVSW GESGKSFIVW NETEFLRDVL  180
PSRLPFDYKD MTSLTTWLHA IGYSKVEESE HWEYTADYLV RGQPLPPKDT SPCTPGGLMI  240
TPELARIIER SFDSPKALKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636305.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895960.0AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636305.10.0PREDICTED: uncharacterized protein LOC106342059
TrEMBLA0A0D3C5F30.0A0A0D3C5F3_BRAOL; Uncharacterized protein
STRINGBo4g190180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.13e-29HSF family protein