PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636576.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 318aa    MW: 34680.9 Da    PI: 8.4171
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-17153207256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  XP_013636576.1 153 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLWTRQVEVWFQNRRARTK 207
                     778899***********************************************98 PP
2HD-ZIP_I/II121.64e-39153242191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l +rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
  XP_013636576.1 153 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLWTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLHKEVSELR-AL 242
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.2E-291115IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.7E-17129210IPR009057Homeodomain-like
SuperFamilySSF466895.56E-18140210IPR009057Homeodomain-like
PROSITE profilePS5007116.568149209IPR001356Homeobox domain
SMARTSM003891.1E-15151213IPR001356Homeobox domain
PfamPF000464.4E-15153207IPR001356Homeobox domain
CDDcd000862.10E-15153210No hitNo description
PROSITE patternPS000270184207IPR017970Homeobox, conserved site
SMARTSM003401.5E-26209252IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-11209243IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGESEDGLGL SLSLGLSQLK EPSLGLGLNL LPLRTSSFSH MHNHNNNHLQ KKIYHNSWPH  60
QFQSSERNSD VGSLLRGLEV NRTPSATVVI NLEEDAAGVS SPNSNVSSVS GNKRDLAAAR  120
GDGGGDENEA ERASCSHRGG SDEEEGGNCE GTRKKLRLSK EQALVLEETF KEHSTLNPKQ  180
KLALAKQLNL WTRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCDTLTEENR RLHKEVSELR  240
ALKLSPHLYM HMTPPTTLTM CPSCERVSAS SSSSAMAAAA PPSSTASGGG RIPTVVGRPS  300
PQRPTPCAAI SLQSRLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157TRKKLRL
2201209RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636576.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935891e-131AB493589.1 Arabidopsis thaliana At2g44910 mRNA for hypothetical protein, partial cds, clone: RAAt2g44910.
GenBankAJ4412511e-131AJ441251.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein ATHB4 (Athb4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636576.10.0PREDICTED: homeobox-leucine zipper protein ATHB-4-like
SwissprotP929531e-139ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLA0A0D3C6B20.0A0A0D3C6B2_BRAOL; Uncharacterized protein
STRINGBo4g195250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.13e-80homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]