PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636789.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 214aa    MW: 23519.1 Da    PI: 4.0971
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.82.5e-1310102794
           NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     +lP+a v r++k  l +     +  i k+a     e +  fi ++++ a+d c+  +r+t++++d++ al ++ f +++eplk+ l  +++ +
  XP_013636789.1  10 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDICKDSRRQTMKAEDVFKALEDMEFSEFLEPLKASLDDFKKKN 102
                     79**********999652222356899***********************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-241099IPR009072Histone-fold
PfamPF008081.3E-81079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.0E-2111134IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDSEKAVVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND  60
ICKDSRRQTM KAEDVFKALE DMEFSEFLEP LKASLDDFKK KNAGKKAAGG SGAAAAASKP  120
KETKKRKHEE ASTQKGVRKS QRDEGDLKND EEDESDNTKG NADDNTEENG NNEEEEEDAN  180
GNEDNSMEEA GSGSAEDDEN EGSGEEEEGD DEDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876740.0KC787674.1 Brassica napus transcription factor subunit NF-YB11B (NF-YB11B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636789.11e-151PREDICTED: DNA polymerase epsilon subunit 3
RefseqXP_013688303.11e-151DNA polymerase epsilon subunit 3
TrEMBLA0A078C3N11e-149A0A078C3N1_BRANA; Transcription factor subunit NF-YB11B
TrEMBLA0A3P6BQ321e-149A0A3P6BQ32_BRAOL; Uncharacterized protein
STRINGBra012016.1-P2e-93(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-63nuclear factor Y, subunit B11