PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636826.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 578aa    MW: 64702.6 Da    PI: 9.1959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-093787346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                     +W t E++ll++avk++G  +W+++a+++          +++ +c+ ++++
   XP_013636826.1 37 AWGTCEELLLACAVKRHGFCDWDSVAAEVRtrtslsaVFLSADDCRQKYRD 87
                     799***************************666666666667777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-43270IPR009057Homeodomain-like
SMARTSM007171.5E-43491IPR001005SANT/Myb domain
SuperFamilySSF466892.74E-53590IPR009057Homeodomain-like
PfamPF002499.6E-93788IPR001005SANT/Myb domain
CDDcd001675.29E-64288No hitNo description
SuperFamilySSF473702.09E-17249363IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.6E-17251363IPR001487Bromodomain
SMARTSM002971.8E-20256365IPR001487Bromodomain
CDDcd043693.38E-15267360No hitNo description
PfamPF004399.8E-11269349IPR001487Bromodomain
PROSITE profilePS5001412.761275346IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MTKEEAAASY SMNDICSNDH NIDDNNNTNL KQHEGRAWGT CEELLLACAV KRHGFCDWDS  60
VAAEVRTRTS LSAVFLSADD CRQKYRDLQR RFKESADGDN DAAEEEEGGN DIPWLEELRS  120
LRVAELRREV EQYDVSILSL QLKVKKLEEE RDGGEKLDLV EEEEERKRER SENDGGEKAE  180
ESERENRSMN ESNSTGSGEK TVGEEEPGRT RGDDLDPDPV NTAEEGSGAS DSGELGESGT  240
SGRKWKRKRR KDSDGEIRSA ASESQPLIRL LDLIRSHPRG SLFERRVRSQ ETTDYKSLVK  300
QHLDIETIQR KLTQGSYDSS KLTFYRDLQL LFANVIVFFP SSSSESMAAH ELRAIVSEEM  360
RKESGKSSPR LFKASPGMTS IKAEAAETSE QKSSAPLVVC KRRRFVSAKA KASPSSSSFS  420
QKEETKEEML SEENENVETG GRSSKRTANN TKTGKGKNKQ KEAEEAKTER KVVVSSDKKK  480
SVADFLKRIK KSSPQKEDKD QNKSKKESKP KPRELRSNNV GKKKKAEVEN AATPAKRAPG  540
RPPQKKNVEA VATASGKRGR ESGSTGKDNK QPKKRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242250RKWKRKRRK
2242251RKWKRKRRKD
3245250KRKRRK
4246251RKRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636826.10.0PREDICTED: bromodomain and WD repeat-containing protein 1
TrEMBLA0A0D3BPT80.0A0A0D3BPT8_BRAOL; Uncharacterized protein
STRINGBo4g021680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-135DNA-binding bromodomain-containing protein