PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637197.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 261aa    MW: 28011.9 Da    PI: 8.4087
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.4e-294107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+
  XP_013637197.1   4 SCNGCRVLRKGCSDDCSIRPCLgwiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQS 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e+++ +e
  XP_013637197.1  99 AVEAVMKGE 107
                     **9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0293109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-234104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQSAV EAVMKGEPIT EMATDAATSG  120
QGPPLKMYDI RHISKDENSP AAAAAAGSTD RKRGKTRRAK RVAAVAKPVE SGGGEASHHS  180
SLSHQSEVVV APHEGESKES ESNNSEVMTF SPPASGEIKL DLTLGLEPVS RADHVVPVKK  240
RKMGVFSTWQ EESSCKTDLV L
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2088770.0AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637197.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-157LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0D3AG060.0A0A0D3AG06_BRAOL; Uncharacterized protein
STRINGBo1g156310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-130LOB domain-containing protein 41