PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637526.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 232aa    MW: 26264.6 Da    PI: 8.2125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-095298354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+h e ErrRR+riNs +++Lr ll  +      K +Ka+ L k+v+ +++L
  XP_013637526.1 52 RKHREGERRRRERINSNLNKLRNLLSCN-----SKTDKATLLAKVVQRVNEL 98
                    569**********************997.....7***********9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.4144998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-75298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1153108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1153106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-655104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-5135211No hitNo description
SuperFamilySSF550213.62E-5135211No hitNo description
CDDcd048735.73E-5136202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQPEISDQIL YSFLTGGSCA SSTTTTTTRS SFYPFAMEDT SSQDKALATT GRKHREGERR  60
RRERINSNLN KLRNLLSCNS KTDKATLLAK VVQRVNELKQ QTLEISNETV PSETDEISVL  120
NFENCSNDDG RIIFKVSFCC EDRPDLMQDL VETLKSLQME TLYAYMTTIG GRTRNDFVVI  180
GNKEKHSVES VKLLQNAFES LLERSNQSVM MGHGGGGERS KRRRPLDHII RV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15263KHREGERRRRER
25762ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637526.11e-172PREDICTED: putative transcription factor bHLH107
SwissprotQ9LET01e-104BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A0D3BXG01e-171A0A0D3BXG0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CQJ61e-171A0A3P6CQJ6_BRAOL; Uncharacterized protein
STRINGBo4g112750.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]