PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637614.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 720aa    MW: 79023.4 Da    PI: 6.9381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-0858100347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_013637614.1  58 AWTHQEEESFFTALRQVGKN-FAKITSRVQ-SKNKDQVRHYYYRL 100
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1150105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-553103IPR009057Homeodomain-like
PROSITE profilePS5129313.17554105IPR017884SANT domain
SMARTSM007174.6E-655103IPR001005SANT/Myb domain
CDDcd001671.55E-558101No hitNo description
PfamPF002491.9E-658100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MLEKSCAMQA EKEVSLSSQG PIEEGRESNQ NSNPNIASSA SIAVPQFPAK KPTRQWAAWT  60
HQEEESFFTA LRQVGKNFAK ITSRVQSKNK DQVRHYYYRL VRRMNKLLGP ELSLDAKNPK  120
DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KLFLEALEHQ LLKDRRKSSR KRACHGESFS  180
SASLGNISSH SRERGLDSSP FKLILCDSQN VRPGRASTKH GESLGVRLGD EKEDTALGRA  240
GRQRRKQAGY RKWEKAAIDG VSLVADAAEH LERTSIDKDV NGQKDLGPTR YLTGKSPLSL  300
PSSGEAPLSD ANMQFSAKLK LQLFPIDEST RRSLEADKHN PHLELTLSNR KKISSVLEHL  360
NRKWGSSSCA CGELMLFPYN ARKETVALHQ RWTNDSFLSA VEVYSMVGSP SLFRLRYGWF  420
VQDASGCLIS QVPTSASCPS LEDNMNVDDA NEVNMLLTES GPLSNKRPTS EQATSVACAA  480
AEARDNYEPA SAAITPFDHL NSGNTLSAGA WADSLTNISI GDLLSEAPDC VDPPATEGSH  540
CLLRDVSFAS DSFDAAIAAH ILRHQNKPSG LIPVTSGSSS LWDDEDTRDA FSFQKTRRAN  600
LSKFADVASN GEPSQVVEAT SGDEGPCNLP DQQGDPMEEG PADPPTMGSP GKTIYGLADV  660
YWPDSLGPLD LDIRSSKYAE DLNLSDSLGG LSRLIATSLD AFQNCSLFGF DSKKDKSNMV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637614.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A0D3BRC50.0A0A0D3BRC5_BRAOL; Uncharacterized protein
STRINGBo4g031010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1