PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638165.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 246aa    MW: 28533.1 Da    PI: 6.677
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.45.5e-12138185552
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                     ++ +r+++NRe+ArrsR R++  i++L++ v +L+ eN++L ++l   
  XP_013638165.1 138 RKRKRMESNRESARRSRMRRQSHIDNLRNQVNQLDLENRELGNRLRLV 185
                     67899**********************************999666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-10130183No hitNo description
SMARTSM003382.0E-14134198IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.783136199IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.45E-10138186No hitNo description
PfamPF001702.4E-9138183IPR004827Basic-leucine zipper domain
CDDcd147021.76E-18139185No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLSTVPAISF LEPGTVNHFS GFQTGFTPWE GDCFDLLSMN HFFIEPAVPS PCYGESDSGL  60
VRTNSGFDDI KTGSDESCAG FTKPGFDDTV SSQGLLCTQG DKLDPDDPKQ WTAIANFEPG  120
EKKHNRNKLI QPEMTDERKR KRMESNRESA RRSRMRRQSH IDNLRNQVNQ LDLENRELGN  180
RLRLVIYHLQ QVNTDNNRLV TEQEMLRLRF SEMRRILILR QLQQQQQWEL NNRRMIMSEQ  240
NPSTII
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638165.10.0PREDICTED: light-inducible protein CPRF3-like
RefseqXP_013723007.10.0light-inducible protein CPRF3-like
TrEMBLA0A0D3A1700.0A0A0D3A170_BRAOL; Uncharacterized protein
STRINGBo1g003470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.17e-91basic leucine-zipper 7