PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638209.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 360aa    MW: 39013.4 Da    PI: 7.9285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10293338655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  XP_013638209.1 293 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 338
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14290354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-11291342No hitNo description
Gene3DG3DSA:4.10.280.103.2E-13292352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-8293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MYQSSSPTSS SSQRSSLPSG GAGLIRYGSA PGSLLNSMVD EVIGGSNGRD FNFPPPDNFL  60
GDFFAGADSS SLRSESMTCG VNSSDGQKHL GSNNNNNNNN NNKDLLPDRS YGGFNEISQH  120
KINNHVGGGG SSSGSYSLAR QRSSPADFFS YLSGEKNNFS SNQPTSDYNQ QGGSNAGRGP  180
SRLKSQLSFT SHDPLARISE VNETSVHYGS GHSFSAASFG AATDSWDDGS GSTGFTVTRP  240
TKRPKDMNSG LFSQYSLPSD TSMNYMDNYM QLPEDSVPCK VRAKRGFATH PRSIAERERR  300
TRISGRLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQHQ LQTLKKEQEN CTCECSERPN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.37830.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638209.10.0PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0D3C7Y50.0A0A0D3C7Y5_BRAOL; Uncharacterized protein
STRINGBo5g007030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-174bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]