PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638510.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 353aa MW: 39173.6 Da PI: 9.5048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.4	5.4e-18	279	328	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_013638510.1 279 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 328 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.9E-24	276	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.225	277	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-19	278	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.78E-15	279	330	No hit	No description
Pfam	PF00010	1.8E-15	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-13	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPNPTPPPS SQGSHLKTHD FLQPLDCVGA 60 KEETSRVDTT RIASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHNQQR IPKPELSPPM 120 MFTAAAQAGG GNERNVVDEI SNSNSSSYAA AASGFTLWDE SGSGKKGQTR KENNAGERAS 180 IRATMGQWPA VERRSQSLTN TPLSGFSSRS SSQGSGLKSQ SFMDMLRSAK GTSQDDDLDD 240 EEDFVTKKES SSTSQIHRDL RVKAEARGVG NDQKLNTPRS KHSATEQRRR SKINDRFQML 300 RQLIPNSDQK RDKASFLLEV IEYIQFLQEK TSKYETPYQG WNHEPAKLLN WVN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPNPTPPPS SQGSHLKTHD FLQPLDCVGA  60
KEETSRVDTT RIASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHNQQR IPKPELSPPM  120
MFTAAAQAGG GNERNVVDEI SNSNSSSYAA AASGFTLWDE SGSGKKGQTR KENNAGERAS  180
IRATMGQWPA VERRSQSLTN TPLSGFSSRS SSQGSGLKSQ SFMDMLRSAK GTSQDDDLDD  240
EEDFVTKKES SSTSQIHRDL RVKAEARGVG NDQKLNTPRS KHSATEQRRR SKINDRFQML  300
RQLIPNSDQK RDKASFLLEV IEYIQFLQEK TSKYETPYQG WNHEPAKLLN WVN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638510.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638510.1	0.0	PREDICTED: transcription factor BIM1-like isoform X2
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A0D3CAD2	0.0	A0A0D3CAD2_BRAOL; Uncharacterized protein
TrEMBL	A0A0D3EGY2	0.0	A0A0D3EGY2_BRAOL; Uncharacterized protein
STRING	Bo5g020460.1	0.0	(Brassica oleracea)
STRING	Bo9g174770.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-166	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]