PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638531.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 314aa    MW: 36989.2 Da    PI: 6.6003
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.13.7e-081155240
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    ++r C+++ +k++ ++C +++ +lC+ C ++ H+       H++v
  XP_013638531.1 11 RPRDCELCLNKHAVWYCASDDAFLCHVCDESVHRAnqvatkHDRV 55
                    5788*****************************767888888765 PP
2CCT66.66.8e-23266309144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++ RY++Krk+R+FeK irYe+RK++A++RpR+KGrFv+++
  XP_013638531.1 266 REARVWRYRDKRKNRLFEKEIRYEVRKVNADKRPRMKGRFVRRS 309
                     9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-71057IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0251057IPR000315B-box-type zinc finger
PfamPF006431.1E-61255IPR000315B-box-type zinc finger
CDDcd000217.11E-91557No hitNo description
PROSITE profilePS5101715.765266308IPR010402CCT domain
PfamPF062031.6E-17266308IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MIPERQEDVK RPRDCELCLN KHAVWYCASD DAFLCHVCDE SVHRANQVAT KHDRVCLITN  60
EISNGVLQGT ARKPVWHSWF RRKPRTPRVR CERKPQGKVD DERRREGPHV PEIGGETNEE  120
DENLTSLVPE FQGFIEMGFF LSNHDGSEET MRQFNVDHET DEMEDLCYIE EEGKTNGDKA  180
CHEQSLTICK NEYDINPTLV TTKTEENAKQ RNMLLRLNYE NVIAAWDKQE SPTTATWNQN  240
EFNNTSNFQL VPPGIEEKNV SNRSEREARV WRYRDKRKNR LFEKEIRYEV RKVNADKRPR  300
MKGRFVRRSL TNDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638531.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8 isoform X1
RefseqXP_013638532.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8 isoform X1
RefseqXP_013749144.10.0zinc finger protein CONSTANS-LIKE 8 isoform X1
RefseqXP_013749145.10.0zinc finger protein CONSTANS-LIKE 8 isoform X1
SwissprotQ9M9B31e-151COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLA0A0D3CFS00.0A0A0D3CFS0_BRAOL; Uncharacterized protein
STRINGBo5g073010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-153B-box type zinc finger protein with CCT domain