PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638577.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 447aa    MW: 50209.9 Da    PI: 5.3926
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1141.6e-3541392127
             NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     p+G+rF+Ptdee+vv+y ++k +e+++ +++ev+++vdiy+++Pw+L+ k ++k++++  wyfF ++++    ++r++r++ sg+W++tg++k++
  XP_013638577.1   4 PVGYRFRPTDEEIVVHYVRPKnIESNTSHVDEVMNTVDIYSFDPWELRfKsRIKSRDEvVWYFFGCKKRMR--NNRQRRTIPSGFWSNTGETKPI 96 
                     89*****************99567777889999**************85247777766799***9998875..569******************* PP

             NAM  93 lsk.....kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                     ++k     ++e++g k+++vf    k ++++ +k+dWvmhey 
  XP_013638577.1  97 IRKkggggDHEKIGEKRVFVFKsksKSKSKSKSKSDWVMHEYV 139
                     **9898887888**********65545666778*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.693163IPR003441NAC domain
SuperFamilySSF1019419.15E-393163IPR003441NAC domain
PfamPF023653.9E-214139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVDPVGYRFR PTDEEIVVHY VRPKNIESNT SHVDEVMNTV DIYSFDPWEL RFKSRIKSRD  60
EVVWYFFGCK KRMRNNRQRR TIPSGFWSNT GETKPIIRKK GGGGDHEKIG EKRVFVFKSK  120
SKSKSKSKSK SDWVMHEYVA TFSSPDSQRM TTSTYTVCKV MFKGDPTDLP SSSSLIPQLN  180
SNSSGGLSTE SEVQNPNQIT SSVSLIPHVN SSSEGLSTEA EVEYRDRGGM SHQITSSISS  240
IPHVNNNNSG VLSTETEVDP RLFSGFLYLE EDAHFEDETL RDLNSLPNND DAEEEEWLVN  300
LWSMQGDRND HRPKMPLTGF ISDDDDDDDS DSDSISTKTC SIKSSSTCVT FGNSNRLIDQ  360
IIDLPESPRS TIESVSLTQE VSKALGANSA ISEKKMSPCD DDAQVSEIGG DQMGQEMVIK  420
NKRAGFIYRM IQKFAKKIKL CSCVSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-16416318165NO APICAL MERISTEM PROTEIN
1ut4_B1e-16416318165NO APICAL MERISTEM PROTEIN
1ut7_A1e-16416318165NO APICAL MERISTEM PROTEIN
1ut7_B1e-16416318165NO APICAL MERISTEM PROTEIN
3swm_A1e-16416021165NAC domain-containing protein 19
3swm_B1e-16416021165NAC domain-containing protein 19
3swm_C1e-16416021165NAC domain-containing protein 19
3swm_D1e-16416021165NAC domain-containing protein 19
3swp_A1e-16416021165NAC domain-containing protein 19
3swp_B1e-16416021165NAC domain-containing protein 19
3swp_C1e-16416021165NAC domain-containing protein 19
3swp_D1e-16416021165NAC domain-containing protein 19
3ulx_A1e-16413816138Stress-induced transcription factor NAC1
4dul_A1e-16416318165NAC domain-containing protein 19
4dul_B1e-16416318165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638577.10.0PREDICTED: NAC domain-containing protein 5-like isoform X5
TrEMBLA0A0D3C7220.0A0A0D3C722_BRAOL; Uncharacterized protein
STRINGBo5g002910.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.19e-84NAC domain containing protein 5