PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638578.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 422aa MW: 47472 Da PI: 5.9801

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.2	4.6e-34	4	149	2	127
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p+G+rF+Ptdee+vv+y ++k +e+++ +++ev+++vdiy+++Pw+L+ k ++k++++ wyfF ++++ ++r++r++ sg+W++tg++k++ XP_013638578.1 4 PVGYRFRPTDEEIVVHYVRPKnIESNTSHVDEVMNTVDIYSFDPWELRfKsRIKSRDEvVWYFFGCKKRMR--NNRQRRTIPSGFWSNTGETKPI 96 89***************99567777889999**********852477777667999998875..569**************** PP NAM 93 lsk.....kgelvglkktLvfy.............kgrapkgektdWvmheyr 127 ++k ++e++g k+++vf k ++++ +k+dWvmhey XP_013638578.1 97 IRKkggggDHEKIGEKRVFVFKysskipggsksksKSKSKSKSKSDWVMHEYV 149 9898887888*******8899999888876656777778*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.827	3	173	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-37	3	173	IPR003441	NAC domain
Pfam	PF02365	1.4E-20	4	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MVDPVGYRFR PTDEEIVVHY VRPKNIESNT SHVDEVMNTV DIYSFDPWEL RFKSRIKSRD 60 EVVWYFFGCK KRMRNNRQRR TIPSGFWSNT GETKPIIRKK GGGGDHEKIG EKRVFVFKYS 120 SKIPGGSKSK SKSKSKSKSK SDWVMHEYVA TFSSPDSQRM TTSTYTVCKV MFKGDPTDLP 180 SSSSLIPQLN SNSSGGLSTE SEVQNPNQIT SSISSIPHVN NNNSGVLSTE TEVDPRLFSG 240 FLYLEEDAHF EDETLRDLNS LPNNDDAEEE EWLVNLWSMQ GDRNDHRPKM PLTGFISDDD 300 DDDDSDSDSI STKTCSIKSS STCVTFGNSN RLIDQIIDLP ESPRSTIESV SLTQEVSKAL 360 GANSAISEKK MSPCDDDAQV SEIGGDQMGQ EMVIKNKRAG FIYRMIQKFA KKIKLCSCVS 420 RI

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MVDPVGYRFR PTDEEIVVHY VRPKNIESNT SHVDEVMNTV DIYSFDPWEL RFKSRIKSRD  60
EVVWYFFGCK KRMRNNRQRR TIPSGFWSNT GETKPIIRKK GGGGDHEKIG EKRVFVFKYS  120
SKIPGGSKSK SKSKSKSKSK SDWVMHEYVA TFSSPDSQRM TTSTYTVCKV MFKGDPTDLP  180
SSSSLIPQLN SNSSGGLSTE SEVQNPNQIT SSISSIPHVN NNNSGVLSTE TEVDPRLFSG  240
FLYLEEDAHF EDETLRDLNS LPNNDDAEEE EWLVNLWSMQ GDRNDHRPKM PLTGFISDDD  300
DDDDSDSDSI STKTCSIKSS STCVTFGNSN RLIDQIIDLP ESPRSTIESV SLTQEVSKAL  360
GANSAISEKK MSPCDDDAQV SEIGGDQMGQ EMVIKNKRAG FIYRMIQKFA KKIKLCSCVS  420
RI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	4	170	18	162	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	4	170	18	162	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	4	170	18	162	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	4	170	18	162	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	4	170	21	165	NAC domain-containing protein 19
3swm_B	2e-16	4	170	21	165	NAC domain-containing protein 19
3swm_C	2e-16	4	170	21	165	NAC domain-containing protein 19
3swm_D	2e-16	4	170	21	165	NAC domain-containing protein 19
3swp_A	2e-16	4	170	21	165	NAC domain-containing protein 19
3swp_B	2e-16	4	170	21	165	NAC domain-containing protein 19
3swp_C	2e-16	4	170	21	165	NAC domain-containing protein 19
3swp_D	2e-16	4	170	21	165	NAC domain-containing protein 19
4dul_A	2e-16	4	170	18	162	NAC domain-containing protein 19
4dul_B	2e-16	4	170	18	162	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638578.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638578.1	0.0	PREDICTED: NAC domain-containing protein 5-like isoform X6
Swissprot	O81914	1e-101	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A0D3C722	0.0	A0A0D3C722_BRAOL; Uncharacterized protein
STRING	Bo5g002910.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	7e-87	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]