PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638582.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 243aa MW: 25562.9 Da PI: 5.1541

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.5	5.5e-36	5	130	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +GfrF Ptd+e+v++y++ k g + ++++++i vdi++++Pw+Lp k + +++++ wyfF+++d+ +g+r++r+tksg+Wk+tg + +++ XP_013638582.1 5 VGFRFIPTDQEIVDYYIRLKNIGGSdtNHVDKAIGAVDICSFDPWELPsKsRRESRDQIWYFFCRKDN---RGERQSRKTKSGFWKKTGPTMDIF 96 7**************9986666556677778***********433445577799*988...589******************* PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +k ++e++g k++Lvf+ +k+ Wvmhey XP_013638582.1 97 QKrgDREKIGEKRVLVFHLSG--CKSKSAWVMHEYV 130 9887889*******433..3359******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.077	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	1.03E-36	4	150	IPR003441	NAC domain
Pfam	PF02365	1.3E-22	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MENRVGFRFI PTDQEIVDYY IRLKNIGGSD TNHVDKAIGA VDICSFDPWE LPSKSRRESR 60 DQIWYFFCRK DNRGERQSRK TKSGFWKKTG PTMDIFQKRG DREKIGEKRV LVFHLSGCKS 120 KSAWVMHEYV ATFLPPTDHM TYTLCKLKFK GDASDLPSSS GADGGGDGGC GDGGGGGGDG 180 DGGGGDGYDG GDGCGGVDGD GGGAGDCDGG GGGGGFDGGG GGGGVDEHNQ FLITHNSGGY 240 ESV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
4dul_A	4e-17	6	129	20	140	NAC domain-containing protein 19
4dul_B	4e-17	6	129	20	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638582.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638582.1	1e-173	PREDICTED: NAC domain-containing protein 5-like isoform X4
Swissprot	O81914	2e-66	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A0D3C724	1e-170	A0A0D3C724_BRAOL; Uncharacterized protein
STRING	Bo5g002930.1	1e-171	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-67	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]