PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638638.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 536aa MW: 60319.2 Da PI: 8.7524

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.7	4.8e-14	23	101	12	97
HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ l +p f+++h g +k+ kt +l++ s ++W vk+ ++ + +t+GW++F+ a++L+ gD+++F+++g++ f +v++f XP_013638638.1 23 HTH-LNIPVAFFSKHvqGRNKHI-KTAKLRTyASAKTWLVKI--NGLR----FTDGWEDFAVAHELRIGDIIIFRHEGEMVF--HVTAF 101 444.99********7555544.7998888***..5555....9********************9998888..88776 PP
2	B3	67.9	1.5e-21	160	253	5	99
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++l+ +rl++pk fa ++g+++ ++k+++l +e+grsW+++++y+ ++ +++ + GW++F+ +ng+++g ++F+l++ +++ +v+++ r+ XP_013638638.1 160 HVSPSSLSCDRLYVPKGFAMSNGLDNMSGKEIVLLNEEGRSWNLNITYNESGMHTFVRPGWRSFCAENGMNQGHHCTFELVR-KSAPPVLRLSRA 253 5678899999*********************************************************************998.888888888775 PP
3	B3	59.9	4.3e-19	274	363	6	97
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++s++l+++ l+l kf++++g+kk s +++le+e+g +W+v l++ +s+r++l+ GWk F++ ng+k+ D+++ kl++ ++ ++v+ ++ XP_013638638.1 274 VSSNSLRTDKLYLQMKFVAANGLKKGFS-EIILENEWGGRWSVGLRHYASSNRTYLGPGWKTFCQVNGIKAEDSFMVKLVE-TGDKPVLLLC 363 57899999**************9887.***********************************************998.5555777776 PP
4	B3	49.5	7.8e-16	440	534	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++ ++lk++ lp f++ +g++k +++++l ++g ++W v l +k+ g++ ++kGW+e ++a+g+k+g++++++l++++e+ +v+k+ XP_013638638.1 440 RLTLTQNALKTSVKHLPLGFTRVNGINK--PRKIILLGKDGvKKWVVDLLKNKSTGTMRIRKGWRELCDAHGVKVGESFLLELIWDEEAIPVLKF 532 556678888999999*******9996..558****9***99999999***************************999999999 PP E- CS B3 97 fr 98 + XP_013638638.1 533 CT 534 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-21	8	106	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-19	9	111	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.617	11	104	IPR003340	B3 DNA binding domain
CDD	cd10017	2.36E-14	12	101	No hit	No description
SMART	SM01019	3.8E-21	14	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-8	25	98	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-21	149	250	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-20	150	250	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.72	156	254	IPR003340	B3 DNA binding domain
CDD	cd10017	7.94E-17	156	243	No hit	No description
SMART	SM01019	6.4E-28	157	254	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-19	160	253	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-15	266	365	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.324	269	365	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-18	270	366	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.22E-15	273	366	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.0E-17	274	364	IPR003340	B3 DNA binding domain
CDD	cd10017	6.12E-14	275	363	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.6E-16	434	534	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-16	434	533	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.57E-14	436	533	No hit	No description
PROSITE profile	PS50863	12.576	438	535	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-15	438	534	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-20	438	536	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TYASAKTWLV 60 KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID 120 DSQDQANNTG NSSGEKRKRV KKNPRTKEES SSDHSHFVAH VSPSSLSCDR LYVPKGFAMS 180 NGLDNMSGKE IVLLNEEGRS WNLNITYNES GMHTFVRPGW RSFCAENGMN QGHHCTFELV 240 RKSAPPVLRL SRAEHDPKLA PESSLHHSYY VGSVSSNSLR TDKLYLQMKF VAANGLKKGF 300 SEIILENEWG GRWSVGLRHY ASSNRTYLGP GWKTFCQVNG IKAEDSFMVK LVETGDKPVL 360 LLCTSNRGKT PLECSEDSDD VNSLSSDTSS GDDSGEESQE SEEESLEDDS SSKDCVEMEK 420 RKRSLRCKYP SSYSKHRFVR LTLTQNALKT SVKHLPLGFT RVNGINKPRK IILLGKDGVK 480 KWVVDLLKNK STGTMRIRKG WRELCDAHGV KVGESFLLEL IWDEEAIPVL KFCTKL

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TYASAKTWLV  60
KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID  120
DSQDQANNTG NSSGEKRKRV KKNPRTKEES SSDHSHFVAH VSPSSLSCDR LYVPKGFAMS  180
NGLDNMSGKE IVLLNEEGRS WNLNITYNES GMHTFVRPGW RSFCAENGMN QGHHCTFELV  240
RKSAPPVLRL SRAEHDPKLA PESSLHHSYY VGSVSSNSLR TDKLYLQMKF VAANGLKKGF  300
SEIILENEWG GRWSVGLRHY ASSNRTYLGP GWKTFCQVNG IKAEDSFMVK LVETGDKPVL  360
LLCTSNRGKT PLECSEDSDD VNSLSSDTSS GDDSGEESQE SEEESLEDDS SSKDCVEMEK  420
RKRSLRCKYP SSYSKHRFVR LTLTQNALKT SVKHLPLGFT RVNGINKPRK IILLGKDGVK  480
KWVVDLLKNK STGTMRIRKG WRELCDAHGV KVGESFLLEL IWDEEAIPVL KFCTKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638638.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638638.1	0.0	PREDICTED: B3 domain-containing protein REM17-like isoform X2
Swissprot	Q84WP3	1e-153	REM17_ARATH; B3 domain-containing protein REM17
TrEMBL	A0A0D3CDE7	0.0	A0A0D3CDE7_BRAOL; Uncharacterized protein
STRING	Bo5g044970.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	1e-149	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]