PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638649.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 241aa    MW: 25152.2 Da    PI: 10.1006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-073558225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_013638649.1 35 KSKPCTKFFSTSGCPFGENCHFLH 58
                    7789******************** PP
2zf-CCCH33.76e-11210235127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C +f++ G C +GdrC+FaHg+
  XP_013638649.1 210 FKTKMCERFSK-GSCTFGDRCHFAHGE 235
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8873361IPR000571Zinc finger, CCCH-type
SMARTSM003560.333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-63458IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-83558IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-53558IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-15103184IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-15113182IPR004088K Homology domain, type 1
SMARTSM003229.2E-10113183IPR004087K Homology domain
PROSITE profilePS5008414.068114178IPR004088K Homology domain, type 1
CDDcd001052.74E-13116178No hitNo description
PfamPF000138.9E-12116180IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.9E-16204239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8209239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446209236IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6209235IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7210235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDARKRGRPE AGSFNSNGGG FKKSKQEMES GLGSKSKPCT KFFSTSGCPF GENCHFLHFV  60
PGGYNPMAQI TNMGSPMSQV SRNMQGGGGG GGGGGRFSGR GESGPGHVSS FGASATAKIS  120
VDASLAGAII GKGGVCSKQI CRQTGAKLSI QDHERDPNLK NIELEGTFEQ INEASAMVRE  180
LIGRLNSASR RPPGGGGLGS EGKPHPGSNF KTKMCERFSK GSCTFGDRCH FAHGEAELRR  240
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638649.11e-173PREDICTED: zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-140C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0D3CKY51e-172A0A0D3CKY5_BRAOL; Uncharacterized protein
STRINGBo5g134720.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-122C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]