PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638693.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 290aa    MW: 31792.4 Da    PI: 6.5838
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17212247134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_013638693.1 212 CRHCGTSEnsTPMMRRGPEGPRTLCNACGLMWANKG 247
                     *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.41166101IPR010399Tify domain
SMARTSM009793.0E-1066101IPR010399Tify domain
PfamPF062002.8E-1171100IPR010399Tify domain
PfamPF062031.5E-15136178IPR010402CCT domain
PROSITE profilePS5101713.066136178IPR010402CCT domain
SMARTSM004012.4E-10206259IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.895206262IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-13209271No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15211253IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.6E-15212247IPR000679Zinc finger, GATA-type
PROSITE patternPS003440212239IPR000679Zinc finger, GATA-type
CDDcd002023.20E-15212265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDDDGLHGNN GGMHSGGDEL PMHVQYEHHG MMDEHADDGM NGGLETDIPS HLGNPSDHRG  60
EVVDRGGENG DQLTLSYQGQ VYVFDHVLPE KVQAVLLLLG GREVPQTLPT TVGSPHQNNR  120
VLGLSGTPQR FSAPQRQASL LRFREKRKGR NFDKTIRYTV RKEVALRMQR KKGQFTSAKS  180
SNEESALTGP DWGSGQSWAL EGCETQKPEA LCRHCGTSEN STPMMRRGPE GPRTLCNACG  240
LMWANKGALR DLSKAPPPQI TRNLPTNKND ESNLEADQMM VVAGDISNSN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638693.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638693.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_013693129.10.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL71e-170GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N6RG160.0A0A3N6RG16_BRACR; Uncharacterized protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-173ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]