PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638752.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22289.7 Da    PI: 9.5825
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.31.9e-131962750
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      r + fskR+ g++KK +E+  LC++e + ++fs +gk y+++
  XP_013638752.1 19 AARMIMFSKRKSGLFKKMNEIVSLCNVETSFLVFSDSGKPYTFA 62
                    568899************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-14564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.381565IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-18676IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-13727IPR002100Transcription factor, MADS-box
PfamPF003191.4E-161961IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-132742IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-134263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKFTKGKQKI EMKKVGAYAA RMIMFSKRKS GLFKKMNEIV SLCNVETSFL VFSDSGKPYT  60
FAYPSLKEAV GQFKNPLRDE PSATINTGPL VEAYRRQKNQ DLMERYMDLV EELEIKNEKE  120
RILKKIIKEN KEKILWNIPP AEGLSVEEKK WMRQTFVDLH VYLGDMALKC FGNDGDRSSS  180
SQESYGRDGE TYA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638752.11e-142PREDICTED: MADS-box transcription factor 23
TrEMBLA0A078HWS41e-141A0A078HWS4_BRANA; BnaC05g47460D protein
TrEMBLA0A0D3CMV91e-141A0A0D3CMV9_BRAOL; Uncharacterized protein
STRINGBo5g148390.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-42AGAMOUS-like 57