PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638791.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 208aa MW: 23799.9 Da PI: 5.4108

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.6	3.6e-16	30	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv +ps v ++ l++p +f+ g+ + s +tle++ g + ++kl ++ +++++l++GW+eF++a+ + eg f+ F ++g+s+f v+ XP_013638791.1 30 FFKVVLPSTVKRNM-LMIPPRFVILQGS--TLSEFVTLETPVGFRRSIKL--KRIGEEIWLQGGWSEFAEAHSISEGHFLFFDYKGNSTF--SVM 117 89999999998876.******66664..48889***********..********************************9999..888 PP EE- CS B3 96 vfr 98 +f+ XP_013638791.1 118 IFN 120 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-23	23	124	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.2E-21	25	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.37E-14	28	120	No hit	No description
PROSITE profile	PS50863	12.238	29	122	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-17	30	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.7E-14	30	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MVTTRQTKAR VTTAFHRRPQ PEPDSSVKKF FKVVLPSTVK RNMLMIPPRF VILQGSTLSE 60 FVTLETPVGF RRSIKLKRIG EEIWLQGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFN 120 VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL 180 NDVDEINSIK LLEEEEEGKR VFRGQQFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638791.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240102	1e-123	AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638791.1	1e-153	PREDICTED: B3 domain-containing protein At3g18960
Swissprot	Q84R27	8e-93	Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBL	A0A3P6F1G9	1e-151	A0A3P6F1G9_BRAOL; Uncharacterized protein
STRING	Bra022374.1-P	1e-117	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	3e-95	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]