PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638952.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 510aa    MW: 57343.3 Da    PI: 4.589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS251.53.3e-771495102374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkf 93 
                     ++lL  cA  +++++ +++q++++ lselas++gd+++Rla++ + AL+++++       + +pps+ +   s+e+ +++k+   f+evsP++ +
  XP_013638952.1 149 EQLLNPCALEITARNSSRVQHYICVLSELASSSGDSNHRLASFGLCALRKHIST------SFVPPSTLTF-ASAEVKMFQKTlleFYEVSPWFAL 236
                     689**************************************************9......6677777764.45555555555589********** PP

            GRAS  94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179
                      + +aN+aIl+ +++e    + +Hi+D+++s+G+QWp+Ll+aL +Rpegpp ++RiT v++ +++          +++++L  fA++l+++++++
  XP_013638952.1 237 PNNMANSAILQILSQEprdkKDLHILDIGVSHGMQWPTLLEALCCRPEGPPlRVRITLVSDLTADipfsVGPPSYNYASQLIGFARSLNINLQIS 331
                     ***************99988889************************99999*********99999998888999******************** PP

            GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273
                     v+        + + ++++p+E+ +V+ +++l++l     s+++er+e Lk+++sl+Pk vv++e + +  +s +F++ f+++l+y ++++ds++ 
  XP_013638952.1 332 VI-------DKSQLIDTSPHETFIVCAQFRLYQLK---NSITDERSEALKALRSLNPKGVVLCEYNGEGsSSVDFAADFSRKLDYLWKFLDSTSY 416
                     96.......445678*******************8...77777789********************9997889*********************9 PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                     ++    +e++  Er l++ e+++v++ +g+     +e +e W er+++aGF++ +++e+a + ak+llrk++ +++ ++e+e+  + l Wk++++
  XP_013638952.1 417 GF----KEENREERNLMEGEATKVLMSSGDT----NEGKEIWYERMRKAGFSAEAFGEDAIDGAKSLLRKYDnNWEIKMEDEDTFAGLLWKGEEV 503
                     97....7777789999999***********9....9************************************777777777777777******** PP

            GRAS 368 vsvSaWr 374
                      ++S W+
  XP_013638952.1 504 SFCSLWK 510
                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.251122489IPR005202Transcription factor GRAS
PfamPF035141.1E-74149510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSLEETEPPS QTLDNVLGWF GDSISLTPLP GFNDSDLLND FDWSQTWEWD HQTQAQDPGC  60
DFLHSYSQDL DAYIGGEATN LEVVTGVPVI DSDPPPVVQL PNDDQSKKRN RDELTDAQLV  120
KRSARSKKKA DKPSEVSRKD SNKAERWAEQ LLNPCALEIT ARNSSRVQHY ICVLSELASS  180
SGDSNHRLAS FGLCALRKHI STSFVPPSTL TFASAEVKMF QKTLLEFYEV SPWFALPNNM  240
ANSAILQILS QEPRDKKDLH ILDIGVSHGM QWPTLLEALC CRPEGPPLRV RITLVSDLTA  300
DIPFSVGPPS YNYASQLIGF ARSLNINLQI SVIDKSQLID TSPHETFIVC AQFRLYQLKN  360
SITDERSEAL KALRSLNPKG VVLCEYNGEG SSSVDFAADF SRKLDYLWKF LDSTSYGFKE  420
ENREERNLME GEATKVLMSS GDTNEGKEIW YERMRKAGFS AEAFGEDAID GAKSLLRKYD  480
NNWEIKMEDE DTFAGLLWKG EEVSFCSLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-2814051079473Protein SHORT-ROOT
5b3h_B4e-2814051025419Protein SHORT-ROOT
5b3h_E4e-2814051025419Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425460.0JX242546.1 Brassica oleracea isolate BoNSP1 nodulation signaling pathway 1-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638952.10.0PREDICTED: scarecrow-like protein 29
RefseqXP_013749773.10.0scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLA0A0D3CKD90.0A0A0D3CKD9_BRAOL; Uncharacterized protein
TrEMBLJ7HDD40.0J7HDD4_BRAOL; Nodulation signaling pathway 1-like protein
STRINGBo5g131770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein