PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639046.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 159aa MW: 18481 Da PI: 6.5239

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.3	6.3e-09	69	106	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA++ gL+ +qV++WF N R + XP_013639046.1 69 FEHflHPYPSDVDKHILARQSGLSRSQVSNWFINARVR 106 664459******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.726	47	110	IPR001356	Homeobox domain
SMART	SM00389	5.5E-8	50	114	IPR001356	Homeobox domain
CDD	cd00086	5.16E-10	50	111	No hit	No description
SuperFamily	SSF46689	1.5E-17	51	118	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-27	53	117	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-17	67	106	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSQALGERDE DNRGVSIAAR GETPRLRLLD QALRQQKSYR QMSLVEAHPW RPQRGLPERA 60 VTALRAWLFE HFLHPYPSDV DKHILARQSG LSRSQVSNWF INARVRLWKP MIEEMYCEET 120 RGGEEQQMDI INPMFVDTKP DPDQIIQVEP ESLSSIVTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	56	114	5	63	Homeobox protein Meis2
3k2a_B	2e-16	56	114	5	63	Homeobox protein Meis2
4xrm_A	2e-16	56	114	5	63	Homeobox protein Meis2
4xrm_B	2e-16	56	114	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639046.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352866	1e-153	AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639046.1	1e-115	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	2e-98	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A0D3C7W2	1e-114	A0A0D3C7W2_BRAOL; Uncharacterized protein
STRING	Bo5g006800.1	1e-115	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5866	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	4e-90	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]