PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639066.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 259aa    MW: 29595.9 Da    PI: 5.3404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.92.9e-3451493128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                     +Gf F+Ptdeelv +yL++k+ g++  ++e+i+ev+i +++Pw+L++              kvk+++  wyfFs+rd    +g+r+nr t+sg+W
  XP_013639066.1   5 VGFGFRPTDEELVGYYLHNKILGQNWLVQEFISEVNISDFDPWNLRSslgvslsvslsvqsKVKSRDLVWYFFSRRDA---NGDRQNRRTSSGFW 96 
                     7************************999999**************855899****9988777777777******9987...799*********** PP

             NAM  84 katgkdkevlsk......kgelvglkktLvfykgrapkge..ktdWvmheyrl 128
                     k tg   +v+++         ++g kk+Lvf  gr+++++  k+dWv+hey+ 
  XP_013639066.1  97 KITGDPVDVKDQwgtwcgFAGKIGYKKVLVFRMGRSSSSQspKSDWVIHEYHY 149
                     ***********98777765556**********8866554444*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.9243167IPR003441NAC domain
PfamPF023658.9E-235148IPR003441NAC domain
SuperFamilySSF1019418.37E-385167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDGIVGFGFR PTDEELVGYY LHNKILGQNW LVQEFISEVN ISDFDPWNLR SSLGVSLSVS  60
LSVQSKVKSR DLVWYFFSRR DANGDRQNRR TSSGFWKITG DPVDVKDQWG TWCGFAGKIG  120
YKKVLVFRMG RSSSSQSPKS DWVIHEYHYT LVPENQRTYV ICRLEYKGHD MSILSSNPTD  180
PVPTFVPDAA NSTASGSVVS QSVQGNLGSF NTFFDYDSAN QGQWFSGDFN LEQPVVPYDD  240
GTYRIWDYVV EENFSRYRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-18616720165NO APICAL MERISTEM PROTEIN
1ut4_B1e-18616720165NO APICAL MERISTEM PROTEIN
1ut7_A1e-18616720165NO APICAL MERISTEM PROTEIN
1ut7_B1e-18616720165NO APICAL MERISTEM PROTEIN
3swm_A1e-18616723168NAC domain-containing protein 19
3swm_B1e-18616723168NAC domain-containing protein 19
3swm_C1e-18616723168NAC domain-containing protein 19
3swm_D1e-18616723168NAC domain-containing protein 19
3swp_A1e-18616723168NAC domain-containing protein 19
3swp_B1e-18616723168NAC domain-containing protein 19
3swp_C1e-18616723168NAC domain-containing protein 19
3swp_D1e-18616723168NAC domain-containing protein 19
3ulx_A1e-18614818139Stress-induced transcription factor NAC1
4dul_A1e-18616720165NAC domain-containing protein 19
4dul_B1e-18616720165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639066.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639066.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-82NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A0D3C7120.0A0A0D3C712_BRAOL; Uncharacterized protein
STRINGBo5g002810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.13e-72NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]