PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639067.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 365aa    MW: 41673.2 Da    PI: 6.1914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.5e-1097850128
             NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                     k+k+++  wyf s+ +k   +g r++r+t sg Wk tg   +v +        +++L+f k+  ++++++ ++Wvmhe + 
  XP_013639067.1   9 KIKSRDPVWYFLSRIEK---NGGRQSRTTPSGSWKLTGDPVNVND--------RRVLTFSKAksSSSTSSISEWVMHELHY 78 
                     56677778998888766...689****************888877........8999999661144555689******875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.924199IPR003441NAC domain
PfamPF023652.8E-6877IPR003441NAC domain
SuperFamilySSF1019419.68E-141099IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MYMVSVQSKI KSRDPVWYFL SRIEKNGGRQ SRTTPSGSWK LTGDPVNVND RRVLTFSKAK  60
SSSSTSSISE WVMHELHYTH TDLPEHKRTT YVICRLEYKG HDVTILSVAP VPPTMANSAS  120
SVVDQSLQGN SGHYNTLSEY DSGHQFNGNY DMQQSFQGYS EYFNPTSEYG LANQSHWFGN  180
LQQQVPYSAP YQDDSDMLRQ VVEENWTSLV DERTCMREDR SHHRPKNPIT GILPGDSSDD  240
DTDSTVWERP WSSTDSVGSK DVPYHTPKDD TSSLSTVEPF PNHEAQEKPK QLELHGKEKV  300
INMQKNECEW KLGEDSIKKA PSTTAVKQSW IVLEEMSQRN SQWIYLKNMI IGFLLSVSFI  360
GWIKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639067.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073237e-32AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965667e-32AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026847e-32CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639067.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-112NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A0D3C7130.0A0A0D3C713_BRAOL; Uncharacterized protein
STRINGBo5g002820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-107NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]