PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639071.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 233aa    MW: 26758.9 Da    PI: 7.7244
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM873.4e-2751366127
             NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                      F+P ++el+++yL++k+++++ ++ + i+ev+i+++eP dLp  +k  + + wyf s+ + k  + +r++ra k+g Wk tg++ ++++++g+ 
  XP_013639071.1   5 TFNPPEDELINYYLNNKITENDDPEGTQINEVNICHHEPADLPGLAKIeSGHTWYFISPVK-KFGKLNRRKRASKTGHWKITGNSCTIKDTDGNP 98 
                     7*********************999888***************543441345777777765.567789999************************ PP

             NAM 100 vglkktLvfykgrapkge..........ktdWvmheyr 127
                     +glkk Lvf ++++++++          k +W++he++
  XP_013639071.1  99 IGLKKFLVFQENKNRRSStllpttahqhKFTWIIHEFH 136
                     **********65444443344444444499*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.0141166IPR003441NAC domain
PfamPF023659.8E-173136IPR003441NAC domain
SuperFamilySSF1019413.79E-304149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNKYTFNPPE DELINYYLNN KITENDDPEG TQINEVNICH HEPADLPGLA KIESGHTWYF  60
ISPVKKFGKL NRRKRASKTG HWKITGNSCT IKDTDGNPIG LKKFLVFQEN KNRRSSTLLP  120
TTAHQHKFTW IIHEFHSFLH HPNKMLTHHK DPVEDYGGDY CNDLEELTQS WEQGESSGLL  180
RGENGHVYGQ NTVENSNTTR AALTSQQRLS FNCFEDLKTK KRPSFGIFGS LLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639071.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639071.11e-175PREDICTED: NAC domain-containing protein 4
TrEMBLA0A397XHE81e-134A0A397XHE8_BRACM; Uncharacterized protein (Fragment)
STRINGBra033297.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-102NAC domain containing protein 49