PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639075.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 155aa MW: 17912.2 Da PI: 9.0129

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.3	3.7e-37	6	140	2	127
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p+GfrF+Ptdee+ + yLk k ++g++ +++evi++vdiy+++P++L + + k++++ +yfF++++++y++g+r++r+tksg Wk+tg +++ XP_013639075.1 6 PVGFRFRPTDEEIFNPYLKSKnMDGNTSHVDEVISTVDIYSFDPSELAsQsstTRKETDNVLYFFCPKENRYNRGERQSRKTKSGSWKKTGVTTN 100 89***************99355556888889**********843432222234466***************************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkge..ktdWvmheyr 127 +++k + e++g k+++vf + g+ k+dWvmhey XP_013639075.1 101 IMRKrgDCEKIGEKRVFVFQYSKILGGTklKSDWVMHEYV 140 9666678******855544444339******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.413	5	155	IPR003441	NAC domain
SuperFamily	SSF101941	1.14E-37	5	143	IPR003441	NAC domain
Pfam	PF02365	7.7E-22	6	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MVDPHPVGFR FRPTDEEIFN PYLKSKNMDG NTSHVDEVIS TVDIYSFDPS ELASQSSTTR 60 KETDNVLYFF CPKENRYNRG ERQSRKTKSG SWKKTGVTTN IMRKRGDCEK IGEKRVFVFQ 120 YSKILGGTKL KSDWVMHEYV ATFVSPNPDG DIYTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-21	6	139	21	143	NAC domain-containing protein 19
3swm_B	4e-21	6	139	21	143	NAC domain-containing protein 19
3swm_C	4e-21	6	139	21	143	NAC domain-containing protein 19
3swm_D	4e-21	6	139	21	143	NAC domain-containing protein 19
3swp_A	4e-21	6	139	21	143	NAC domain-containing protein 19
3swp_B	4e-21	6	139	21	143	NAC domain-containing protein 19
3swp_C	4e-21	6	139	21	143	NAC domain-containing protein 19
3swp_D	4e-21	6	139	21	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639075.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639075.1	1e-114	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	4e-54	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A078FQS9	1e-103	A0A078FQS9_BRANA; BnaC05g01030D protein
STRING	Bo5g002950.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	2e-56	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]