PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639076.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 394aa MW: 44869 Da PI: 5.1221

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.4	2.8e-36	4	132	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p+G+rF Pt +e+ +yL+ k g + +++evi++vdiy++eP +Lp+ +++++++ +yfF++r++ky++g++++r+t+ gyWk tg+ +e++ XP_013639076.1 4 PVGVRFCPTVDEIFGHYLRLKNLGGDtSRVDEVISTVDIYSFEPFELPRhsRMESSDQVYYFFVRRQNKYKRGEKQRRQTTFGYWKITGHPTEIM 98 89***************99777764777888**********9434888888899********************************* PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +k ++e++g k++L+fy+ ++pk +k+dWvmhey XP_013639076.1 99 RKggDSEKIGEKRVLMFYE-SEPK-SKSDWVMHEYI 132 9888889*******5.4555.5*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-37	2	153	IPR003441	NAC domain
PROSITE profile	PS51005	40.014	3	153	IPR003441	NAC domain
Pfam	PF02365	4.6E-18	4	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MEYPVGVRFC PTVDEIFGHY LRLKNLGGDT SRVDEVISTV DIYSFEPFEL PRHSRMESSD 60 QVYYFFVRRQ NKYKRGEKQR RQTTFGYWKI TGHPTEIMRK GGDSEKIGEK RVLMFYESEP 120 KSKSDWVMHE YIATLMPPTH QMTTYTVCKL MFKGDPKDLP TSSSAAASVG SGEIEQNHSL 180 ITHMNNPGRG LSSEGSTFEL QNQRQFTGFL HLEEETQIDD AIRRVINNLS PHDFNCLLNN 240 DNADEEEEQE TIMLTQEDRN DHKPKKSLTG IFTGHSDDDS DSDLISATTT VSIQTSSTCD 300 SFGSSYPRID QTTDMQESPC STIESASVTQ EVRKALGTND IDTSEKKMNP YDDDAQGSEF 360 CQEIVIKNKR AGFIYRMVQR FTKKIKLCSC VSIA

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MEYPVGVRFC PTVDEIFGHY LRLKNLGGDT SRVDEVISTV DIYSFEPFEL PRHSRMESSD  60
QVYYFFVRRQ NKYKRGEKQR RQTTFGYWKI TGHPTEIMRK GGDSEKIGEK RVLMFYESEP  120
KSKSDWVMHE YIATLMPPTH QMTTYTVCKL MFKGDPKDLP TSSSAAASVG SGEIEQNHSL  180
ITHMNNPGRG LSSEGSTFEL QNQRQFTGFL HLEEETQIDD AIRRVINNLS PHDFNCLLNN  240
DNADEEEEQE TIMLTQEDRN DHKPKKSLTG IFTGHSDDDS DSDLISATTT VSIQTSSTCD  300
SFGSSYPRID QTTDMQESPC STIESASVTQ EVRKALGTND IDTSEKKMNP YDDDAQGSEF  360
CQEIVIKNKR AGFIYRMVQR FTKKIKLCSC VSIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-19	1	131	13	138	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639076.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639076.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	1e-112	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A0D3C727	0.0	A0A0D3C727_BRAOL; Uncharacterized protein
STRING	Bo5g002960.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-106	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]