PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639107.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 244aa MW: 27894.8 Da PI: 10.4525

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.9	5.7e-11	114	221	1	81
EEEE-..-HHHHT.T-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE.......EEETTE......EEE-TTH CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliy.....rkksgr......yvltkGW 65 f+k+l+ sdv+ + +r+ +p k ++++ g+kk +++ l +e++++W++ ++ + +++ yvl +GW XP_013639107.1 114 FEKTLSVSDVNPNqSRFLIPFKKLKRNdfltqeessfleqdenkkGMKK-PGVEALLVNERSETWSLVFKRwvmkkK--KDSqngslnYVLNRGW 205 8899999999988789999999999999999999999999888855554.568***********99955588642..333457899*** PP HHHHHHHT--TT-EEE CS B3 66 keFvkangLkegDfvv 81 ++ vk+n+Lk+ D + XP_013639107.1 206 NDIVKDNKLKAEDKIS 221 **********9775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03754	1.9E-32	106	211	IPR005508	B3 domain-containing protein
Gene3D	G3DSA:2.40.330.10	1.3E-20	108	237	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.69E-18	110	237	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.76E-11	113	235	No hit	No description
PROSITE profile	PS50863	11.209	134	239	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MLKAKSSSSS SPRILKFDLN ELPPSDTDDE EQDEAKRRDH KVSSGASSRF CNNFDLNKSP 60 KEEPPNHDGH KVTQNFLKPK PLKKRGRGSS GRLNKAKKQR LNVALEVKDA ILIFEKTLSV 120 SDVNPNQSRF LIPFKKLKRN DFLTQEESSF LEQDENKKGM KKPGVEALLV NERSETWSLV 180 FKRWVMKKKK DSQNGSLNYV LNRGWNDIVK DNKLKAEDKI SLWSFRCNGV LCFSLVTHLS 240 TISS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639107.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639107.1	1e-177	PREDICTED: putative B3 domain-containing protein At3g49610
Swissprot	Q9SCJ8	6e-43	Y3961_ARATH; Putative B3 domain-containing protein At3g49610
TrEMBL	A0A0D3C7U3	1e-176	A0A0D3C7U3_BRAOL; Uncharacterized protein
STRING	Bo5g005620.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM273	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	4e-33	B3 family protein

Publications ? help Back to Top
Baerenfaller K, et al. Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science, 2008. 320(5878): p. 938-41 [PMID:18436743]